Today after more than a month, after enough waiting from the patent office for any information/intimation I  decided to take some action and visit the website. I was not only disappointed but horrified to see that there was no trace of my earlier application/payment or any way of tracing the Permanent number alloted to me when I had applied for the patent and made payment of Rs. 1000 for the same.
I immediately shot an email to the authority mentioned in the receipt of the payment which also mentioned the CBR number.
Now waiting for any reply. By the way the contact us link on the account page to submit and trace the status of application as provided  does not work so forget about getting any response from the website administrators.